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| Chemical Name | N6-(Phenoxyacetyl)-5’-O-(4,4’-Dimethoxytrityl)-3’-O-(N,N-diisopropylamino)[4-oxopentyl]-phosphinyl-2’-deoxyadenosine |
| CAS Number | 1097651-25-6 |
| Molecular Formula | C50H59N6O9P |
| Molecular Weight | 919.03 g/mol |
| Mass Contribution | 399.3 g/mol |
| Storage Conditions | Keep in a dark and dry place at −20°C. Store under argon. |
| Usage | Prepare 0.067M solution of dA(Pac) Oxopentyl Phosphoramidite in dry MeCN. Cap A solution must be the phenoxyacetyl anhydride version of the reagent, not acetic anhydride. Deblock in 0.05M K2CO3 in MeOH, room temp, 16-20 h. |
Oxypentyl-modified Nucleoside Phosphoramidites are designed for the synthesis of oligonucleotides containing a thermolabile 3'-blocking group, which prevents primer hybridization and extension at low temperatures and is automatically removed during high-temperature activation.
Oligonucleotides synthesized using these phosphoramidites function as built-in hot-start primers, eliminating premature annealing and nonspecific extension during reaction setup and thermal cycling.
Key features:
Oxypentyl phosphoramidites provide a chemical approach to hot-start PCR, allowing precise control of primer activity without the use of modified enzymes.