dA(Pac) oxopentyl phosphoramidite

dA(Pac) oxopentyl phosphoramidite

Cat. number: 1032
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Price: 190 €

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Description
Chemical Name    N6-(Phenoxyacetyl)-5’-O-(4,4’-Dimethoxytrityl)-3’-O-(N,N-diisopropylamino)[4-oxopentyl]-phosphinyl-2’-deoxyadenosine
CAS Number 1097651-25-6
Molecular Formula            C50H59N6O9P
Molecular Weight 919.03 g/mol
Mass Contribution       399.3 g/mol
Storage Conditions                  Keep in a dark and dry place at −20°C. Store under argon.
Usage Prepare 0.067M solution of dA(Pac) Oxopentyl Phosphoramidite in dry MeCN. Cap A solution must be the phenoxyacetyl anhydride version of the reagent, not acetic anhydride. Deblock in 0.05M K2CO3 in MeOH, room temp, 16-20 h.

Oxypentyl-modified Nucleoside Phosphoramidites are designed for the synthesis of oligonucleotides containing a thermolabile 3'-blocking group, which prevents primer hybridization and extension at low temperatures and is automatically removed during high-temperature activation.

 

Oligonucleotides synthesized using these phosphoramidites function as built-in hot-start primers, eliminating premature annealing and nonspecific extension during reaction setup and thermal cycling.

Key features:

  • Temporary 3′-blocking with thermal removal
  • Suppression of nonspecific primer binding
  • Reduction of dimer formation
  • Compatibility with standard oligonucleotide synthesizers

Oxypentyl phosphoramidites provide a chemical approach to hot-start PCR, allowing precise control of primer activity without the use of modified enzymes.